rs47525665 SNP Detail

Summary

• ID
  rs47525665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130487481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTCAGAT CCTTTATCAG
  GTCTACCTCA GCTCCACAGG CAAATTGTGC CAGTCTTGAG ATGGTCTCCA ACCCAGGTCA
  CAACAGCAGC CCAGTCAGTG TCTAGCCATA CTGCCCTGCC AGCCAATGAC ATCTTGACTT
  CACCTGCCAT CTTATCCTTC CTAAATCCAC TTTCTTCCTT CTCCTCTCAG ACGACTCACA
  Y
  TCCACAAAAC CACTTTATAC TTGTCAGCAT CCTCTCCCAA GAGAGCCAAT AGTCAAAGAT
  GAGTTTGTCT CCTTTCCGGC AGGAAAACTC ATTCTACATT CACCTGCCTA GCAAATAAGT
  CGTAGCAGCT TTCTAGTGCA CTGTGATGCC GGCTCACGCT GCCGTAAAAT ACTTTATGCC
  TAGTATTGTT TTTTTTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61080654	NES16590417	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47525665					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080654	NES16590417	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130487481 () rs orientation: forward

Symbol	Name	Function Class
Gm36373	predicted gene, 36373	1117 bp upstream
Gm65113	predicted gene, 65113	within coordinates
Rr398016	regulatory region 398016	206 bp upstream
Rr585191	regulatory region 585191	1685 bp distal
Rr585194	regulatory region 585194	294 bp proximal
Rr585195	regulatory region 585195	381 bp proximal
Rr585196	regulatory region 585196	909 bp proximal