rs47525923 SNP Detail

Summary

• ID
  rs47525923
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80818129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCCATGA TAGCCTGACC
  CTACCCTCAC CACACCCAGT TACCACAACC ACAAGGCATT TACCAGCTTG TGTCAACAAA
  GAATATCTAG AACTTGAAAA TGTGTCTTTC TCAGGAGAAG GCCTAACATC CTCTAGTTCC
  CTCGGGGGCT GATCTGATAA GGACACAAAA ATCTTAACAC TGAGGAGTTT TGATGTCAGC
  W
  CGTGGTAGGC CTGACCTGCC TCTCACTCCT CAGCCCAAGG GTATCTTACC CAGAGACCAA
  GAAAGTGCAT GCATATAATT CAAGGCTAGC CTACACTTCA TCCTGACATA AAATGCTAAG
  TAGGTAGGCT GTCGATGGTA GTTAGGAGAT GCCTCTGGAC ATGATATGAA ACTTCCTGAA
  TGCTAGACAT TAGTCTCCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135386099	ENSMUSSNP787457	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47525923					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80818129 () rs orientation: forward

Symbol	Name	Function Class
Glrb	glycine receptor, beta subunit	within coordinates
Gm54207	predicted gene, 54207	1716 bp upstream
Rr578673	regulatory region 578673	1985 bp proximal