rs47526531 SNP Detail

Summary

• ID
  rs47526531
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71064057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCCCCTC CCGCTCCGTC
  CGGGACCACA GCCCCTCCCA GCTGTGCTTT GGAGGCTGCA CAGCTGGAGC ACGGCTGTAC
  ACGGAGACTG CTTCCTCTCC GTAGCTGTAA TTATGGGTAA TTTTCTAAGT GCAACACAAA
  AATTAAAACC CAAACAACAC CAGGAAGGGG GCAGCCGCAG CTGGTGCACG CGGCAAGCCC
  R
  GAGACGTGGA CCTGGAGTGG AGGAGGAAGG AGTCCTGAGG GCGACCTGTG CCTCTGGCTC
  TCGGGGTACG AAGTTCCCAA AGTAGAGTTA CTGGGTGCAA AAGCCCGAGT TTGGACGCTG
  CTTGCTCTGT GCTGCGGTGC CAGCGCAACC TCTGCTCTCT CGGAGCCACG CTGGAAGGAG
  AGAGAGACGT CCGCCCTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60632750	NES16282160	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47526531					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60632750	NES16282160	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71064057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20476	CpG island 20476	923 bp distal
Cpgi20477	CpG island 20477	within coordinates
Gm45546	predicted gene 45546	within coordinates
Gm63790	predicted gene, 63790	551 bp downstream
Rr400904	regulatory region 400904	262 bp downstream
Rr400905	regulatory region 400905	476 bp upstream
Rr664836	regulatory region 664836	1004 bp distal
Rr664837	regulatory region 664837	within coordinates
Rr664838	regulatory region 664838	457 bp distal
Rr664839	regulatory region 664839	202 bp proximal
Rr664840	regulatory region 664840	732 bp proximal
Tssr77777	transcription start site region 77777	995 bp downstream
Tssr77778	transcription start site region 77778	689 bp downstream