rs47527073 SNP Detail

Summary

• ID
  rs47527073
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36060349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTGGTCA CCAAGGTGAC
  CGTGTCCTAT GCAGGTCCCA CCCTAATGCT TCTGAACCTG ATCTGGAAGG AATGACCTTT
  CTTCCTGGTC TAAAGGTCAT AGGTACGCTT GAGGGTGCCT CACTCACAGA AGTCGAGACT
  TACTACTTCT GATGGTGCTG CTCAATTCTT AAACACTTCC CCTACGCCCC CCAGTAGTGT
  Y
  AGCAGTTAGA ATTGTCCAGC TCATGTGATT CTGAAAGCTA GATTTGGAGA AAGGGGAACG
  AACCTTAACG ATTTTATGTG TGTGTTCTTC CCTTTCCCCT TCTCTGTGAT TATAACTGTC
  CCTATTGCCT TCTTCCTATC CATCAGGTGC AGCATGCCAG CAAGCAAATC ACGGCAGATA
  AGCAATACAA GGGCATCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss134159056	ENSMUSSNP83133	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs47527073					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36060349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22665	CpG island 22665	within coordinates
Rr690675	regulatory region 690675	1854 bp distal
Rr690676	regulatory region 690676	1808 bp distal
Rr690677	regulatory region 690677	1035 bp distal
Rr690678	regulatory region 690678	within coordinates
Rr690679	regulatory region 690679	383 bp distal
Rr690680	regulatory region 690680	290 bp distal
Rr690681	regulatory region 690681	79 bp distal
Rr690682	regulatory region 690682	within coordinates
Slc25a5	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	within coordinates
Tssr5608	transcription start site region 5608	968 bp downstream
Tssr160750	transcription start site region 160750	1086 bp downstream
Tssr160751	transcription start site region 160751	1056 bp downstream
Tssr160752	transcription start site region 160752	1043 bp downstream