rs47528820 SNP Detail

Summary

• ID
  rs47528820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:3624849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACAGTTT TGCACCCTAA
  GCCTTTTTCA GCAATGTTGC GACCAGTTAG GTAACTCATT AAACCTTAGA TCCTGTGCCA
  ATGATCTTAG CTTCTAGTCA TTTCATTTGT ACTTCTTTGA CCTTTTATTA GTAAAATAAG
  TCTGTGGAGC TCTGCATAAG TGTGTATGTA TTATGGTTGT ACATTTTTCT GTTCTGTGTG
  Y
  ATGTGCACAT GTTTGTGTAG GCCAGAGGTT GTCGATGGGT GTCTTCTGAG ATAACACTTT
  CAACTTCATT GTCTAAGGCA CGATCTTGCA GAAAGCCAGA GCTCTTGGAC CTTGCTAATC
  TTAACCTAGC CAGCTTGTCT TAAGGGTCCT CTGACTTACC TCCCCAAATG CTGGGGTTAC
  AGGTGGTCTA TCATGCTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146262572	ENSMUSSNP4253375	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47528820					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3624849 () rs orientation: forward

Symbol	Name	Function Class
Gm50615	predicted gene, 50615	Intron
Rr550923	regulatory region 550923	within coordinates