rs47529205 SNP Detail

Summary

• ID
  rs47529205
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30734431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGTCCTGT GTGTCTCTGT ATCGCTCATC GGGGCACTAC
  CACGTGACCG AGCCCAGGAA GAAAAGGACA ACAGAGGAAG AGACGTGCAC TCTAGGAACA
  K
  CGCCCCCTGC TGCAACCAGA ACAACCGCCC AGCTGGATGC AACCAGCAGG CTAGGCCGAG
  AATCATCCCT GGGGTGGTTT GTAGGGGTGC TGAGTTTGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148696786	ENSMUSSNP1749946	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47529205					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30734431 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	1837 bp upstream
Gm71772	predicted gene, 71772	1983 bp upstream
Rr644978	regulatory region 644978	648 bp distal
Rr644979	regulatory region 644979	within coordinates
Rr644980	regulatory region 644980	within coordinates
Rr644981	regulatory region 644981	1893 bp proximal
Rr644982	regulatory region 644982	1994 bp proximal
Tssr2191	transcription start site region 2191	454 bp downstream
Tssr65830	transcription start site region 65830	222 bp upstream
Tssr65831	transcription start site region 65831	1982 bp upstream
Tssr71891	transcription start site region 71891	1451 bp downstream