rs47529678 SNP Detail

Summary

• ID
  rs47529678
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136856868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAAAAAA GAAACGGCCA
  TTGTGTTACT GGGTTTCTAA GGCTGAACTG AGAACTCAGA TATAGGTGGA CCTCTCTCCT
  ACCAGTAAGT ATGGCAAAGA ATAGCCAGAG GCCTTCAGAA GCAGATGGCT TGCATAGTTA
  CAGTTATGGA TTTCTTTTTC TTTTTCTTTT TTTTTTTTTA ATTTTCAATT ACATTTCCAC
  A
  GGGGGGGGGG GGGAGGAATA AGAATTCAGT CAAGAAAAAT GTAGCTATCC CTAAAAATTT
  CTCACTGTTC ACCAAAGTGC CCCAAGTCGA GACAGGTATA AATTTAACAT TACCATATCA
  GAAAACAAAA TTTGAGGCAG AATTCGGAAA CTTGTGTGAA AATGATTGTC AATGTACTGA
  TCCTAGGATA TCATGAGCAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135938708	ENSMUSSNP1397168	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47529678					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136856868 () rs orientation: forward

Symbol	Name	Function Class
Rr375787	regulatory region 375787	1616 bp upstream
Rr585922	regulatory region 585922	116 bp distal