rs47530248 SNP Detail

Summary

• ID
  rs47530248
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:99773893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG GGATGGAGCC CAGGGGGCTA
  K
  GCAGCACCCC TGTCAGATTC CCTGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134256554	ENSMUSSNP4061369	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss325907525	CHEV_X_97925626	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47530248					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:99773893 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gdpd2	glycerophosphodiester phosphodiesterase domain containing 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm52438	predicted gene, 52438			1126 bp upstream
Rr692772	regulatory region 692772			91 bp distal
Rr692773	regulatory region 692773			188 bp distal
Rr692774	regulatory region 692774			within coordinates
Tssr161618	transcription start site region 161618			464 bp downstream
Tssr161619	transcription start site region 161619			441 bp downstream
Tssr161620	transcription start site region 161620			324 bp downstream
Tssr161621	transcription start site region 161621			293 bp downstream
Tssr161622	transcription start site region 161622			165 bp downstream
Tssr161623	transcription start site region 161623			146 bp downstream
Tssr161624	transcription start site region 161624			120 bp downstream
Tssr161625	transcription start site region 161625			98 bp downstream