rs47531188 SNP Detail

Summary

• ID
  rs47531188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122834376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG TTCAAGGCCA GCCTGGTCTA
  Y
  ACAGTGAGTT TCAGGACAGC CAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss149189794	ENSMUSSNP4488411	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321669480	CHEV_5_123146322	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47531188					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122834376 () rs orientation: forward

Symbol	Name	Function Class
Gm10064	predicted gene 10064	889 bp downstream
Gm71244	predicted gene, 71244	1151 bp upstream
Rr378567	regulatory region 378567	1820 bp upstream
Rr619947	regulatory region 619947	462 bp distal
Rr619948	regulatory region 619948	1789 bp proximal