rs47531963 SNP Detail

Summary

• ID
  rs47531963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:83722979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATTTTAA TTTTAATTCA
  TGACCTAGAG CTCTCTGGTA TATAATATCA AGGTTCTGTA ATTTTGTGTC TGACTCCCTA
  AGGAGATATG ATATGTCTCT TTTAAACATT TAAATTTAGA GGGCTGTGGT CTATTATTAA
  AAAGCATATA GTTACAAATG AGATAATAAC CTTAGCTTTT TTGCACCACG TATTTCTTAC
  Y
  AGTGACCGTC ATTCGCGAGG ATTGTTCTAA TGAAGAGTTT AAGAGCTTCA GGAGGAAGTG
  CTCTCACTGC TAAGCGATGC TTAAACATAA GAGGAAACAC CCCATATTAC TTTTCCTGTG
  CTCCCTGGCA GTGATCTTCG TAAAATAAGA TTAAAGGATT TAGTTTTAAA TTAGTTGACA
  TTTACATATA TCAAAGAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61892653	NES17096060	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47531963					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61892653	NES17096060	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:83722979 () rs orientation: forward

Symbol	Name	Function Class
Gm55122	predicted gene, 55122	within coordinates
Mef2c	myocyte enhancer factor 2C	within coordinates
Rr1598	regulatory region 1598	738 bp downstream
Rr483253	regulatory region 483253	1228 bp distal
Rr483254	regulatory region 483254	297 bp distal
Rr483255	regulatory region 483255	within coordinates
Tssr120505	transcription start site region 120505	1257 bp downstream
Tssr120506	transcription start site region 120506	376 bp downstream
Tssr120507	transcription start site region 120507	279 bp upstream
Tssr120508	transcription start site region 120508	765 bp upstream
Tssr123330	transcription start site region 123330	138 bp downstream
Tssr123331	transcription start site region 123331	793 bp downstream