rs47533040 SNP Detail

Summary

• ID
  rs47533040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:69664818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG TAGAGAGGTC CCTCCCACGT
  R
  AGTACTGGGA ACCAACCCCA AGTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144563517	ENSMUSSNP850021	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss324404685	CHEV_13_69655577	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47533040					SNP	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69664818 () rs orientation: forward

Symbol	Name	Function Class
Rr273498	regulatory region 273498	18 bp distal
Rr277031	regulatory region 277031	1618 bp distal
Tent4a	terminal nucleotidyltransferase 4A	within coordinates