rs47533799 SNP Detail

Summary

• ID
  rs47533799
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:139534618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATCCATTA CTGTTTAGAT AGCTTTGAGA CAGATAACTA
  TGAATTTTCT GAGTTTCAGG TACTGTCTGG AACTTGTGAG TTGTTTATTT CCTGAGTCTT
  M
  ATAAGCCTTT CTACACGGTG GAGTGTTTTG GTTAAGAGGT AATTGTTACA CAACAAACAA
  ACATGTAATA ACAATGAGCC CTGGGAGTTC AGTGACAGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss133918675	ENSMUSSNP5048929	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss322020310	CHEV_6_139506141	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47533799					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:139534618 () rs orientation: forward

Symbol	Name	Function Class
4930404I20Rik	RIKEN cDNA 4930404I20 gene	within coordinates
Gm67453	predicted gene, 67453	96 bp upstream