rs47536842 SNP Detail

Summary

• ID
  rs47536842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69873115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAG ACTGTTTGGA TGAACCCAGG
  Y
  ATCTCTGGGT TCTCTCCCTC AAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss132363623	ENSMUSSNP3887503	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss323732460	CHEV_11_69795791	CHEVERUD	SCREENING_POP	f	SNP			C		C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs47536842					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69873115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3163	CpG island 3163	602 bp distal
Ctdnep1	CTD nuclear envelope phosphatase 1	within coordinates
Elp5	elongator acetyltransferase complex subunit 5	763 bp upstream
Gm56228	predicted gene, 56228	1475 bp downstream
Rr402684	regulatory region 402684	1472 bp downstream
Rr450182	regulatory region 450182	1996 bp distal
Rr450183	regulatory region 450183	1123 bp distal
Rr450184	regulatory region 450184	547 bp distal
Rr450185	regulatory region 450185	643 bp proximal
Tssr102587	transcription start site region 102587	1527 bp downstream
Tssr102588	transcription start site region 102588	1510 bp downstream
Tssr102589	transcription start site region 102589	1461 bp downstream
Tssr102590	transcription start site region 102590	1448 bp downstream
Tssr102591	transcription start site region 102591	1203 bp downstream
Tssr102592	transcription start site region 102592	1075 bp downstream
Tssr102593	transcription start site region 102593	1029 bp downstream
Tssr102594	transcription start site region 102594	920 bp downstream
Tssr102595	transcription start site region 102595	899 bp downstream
Tssr102596	transcription start site region 102596	818 bp downstream
Tssr102597	transcription start site region 102597	809 bp downstream
Tssr102598	transcription start site region 102598	787 bp downstream
Tssr102599	transcription start site region 102599	756 bp downstream
Tssr108902	transcription start site region 108902	1999 bp upstream
Tssr108903	transcription start site region 108903	1714 bp upstream
Tssr108904	transcription start site region 108904	1049 bp upstream
Tssr108905	transcription start site region 108905	1025 bp upstream
Tssr108906	transcription start site region 108906	996 bp upstream
Tssr108907	transcription start site region 108907	341 bp downstream