rs47537238 SNP Detail

Summary

• ID
  rs47537238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46354728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGATCAG AAAAAACCAA
  TTCTGTTCCT ACTGATACTC TCTACAGCTT AATTGCCCTT GGTTGATTGA CAAGTTAACA
  ACTTTAGAGT CACTAAATGG ACATTGTCAG CTAGCAATAT TTAAGCAGTA AAGCTTGCCC
  CTAAGGGTAA ATTCTAAGAC TCCACTGGAT GTCTGGAACC CGACTGATGC AAGGTAAGAC
  R
  CTACTTGCAA GTGCCTATAA TAAAGCTTAG TTTAGATATT AGGCTGAGTG TGCTGGGGAG
  ACAACTCAGT TGGCAAGGTG GTTACTGAGT TAGACTAGGG TTAGAACCCC AAAAGCCATA
  TAAAAAGCTG ACCGCCGTCA CATGTGCTTG TGATCCCAAT GATGGCGGAT ACAGGAGGAC
  CCCTGAGGCC CGCGCGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398313483	MGP_WTSI_17_46180751	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	G	A	G	G	G	A	A	A	G	A	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs47537238					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	G	A	G	G	G	A	A	A	G	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398313483	MGP_WTSI_17_46180751	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46354728 () rs orientation: forward

Symbol	Name	Function Class
Gm65021	predicted gene, 65021	within coordinates
Rr331524	regulatory region 331524	1528 bp distal
Rr335147	regulatory region 335147	1327 bp distal
Rr335148	regulatory region 335148	728 bp distal
Rr335149	regulatory region 335149	873 bp proximal
Rr335150	regulatory region 335150	1473 bp proximal
Rr341797	regulatory region 341797	1985 bp distal
Rr405310	regulatory region 405310	1999 bp upstream