rs47537279 SNP Detail

Summary

• ID
  rs47537279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31344518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGTCTTT ATTCTTCAGG
  ACTCCTGGCT CCTTTATTGG CCTGCAGCAG GGAGCAGATC GGGGATGCTT GCTACCCTTG
  GCCACCATCA GCAGCAGGAG TCCAGGGTGC AGAGCTCCCT TCCTGGAGCC TGGACAGCTT
  CAAAATGTGC ATTCTGGGAA GGAAGGAAGG AAAGGGTCAA GGTGAGTGGG GTCATTCCGA
  Y
  GCAGCCCTAC GTCCCTTCCC AAGGGCAAGA CAGGCTCTGA GGCCAGCACC TGTCTGCCTT
  CTTCTCCTGG GTCACAATAG ATATCTGAGC CCCCTCCCAC CCTCTAAAGC CTGGGAGAGA
  AACTAAGCAT CCTCCCTGGT GAACCGAGCC ACATAACTGG ATCCCTCCTA GTGGTCCTGG
  CAGGGGTTAT GTGAGATGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60562260	NES16490712	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47537279					SNP	T	T	T	T	T	T	C	T	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60562260	NES16490712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31344518 () rs orientation: forward

Symbol	Name	Function Class
Rr334775	regulatory region 334775	within coordinates
Rr341220	regulatory region 341220	1683 bp proximal
Tff3	trefoil factor 3, intestinal	within coordinates