rs47537409 SNP Detail

Summary

• ID
  rs47537409
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125568296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT GTTAATGTTT GGTCTGTTGC
  W
  ATGGATTGTA ATGCTAAATT CTGTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147486087	ENSMUSSNP6071491	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320497844	CHEV_2_125552112	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47537409					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125568296 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr70	DNA Segment, Chr 2, Derry C. Roopenian 70	641 bp distal
D2Mit398	DNA segment, Chr 2, Massachusetts Institute of Technology 398	638 bp distal
Rr367290	regulatory region 367290	1638 bp downstream
Rr564272	regulatory region 564272	1057 bp distal