rs47537444 SNP Detail

Summary

• ID
  rs47537444
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:149211810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTGCTTT GGTATTAAAG
  GGCAGTAGTG GACTTGGAGA AGCCCGCTTG AATTCTAGTG GCAGGGAATA TTTTGAGAGT
  AGCCTAATTC AGTAGTTTTG TTTTTAGCAC AATTGAAATA AATTCAGTAA ACTTAGTATG
  GTCTCAATGA CACTGTAAGG GAAATGTACT AGACCTTAAC TCTTGCTTTC TTGTTTCTTG
  M
  TTTTCATAGA ATTAGAGGCG TGAATACCTT GTGGAAGAGA TTAAAAGGTA AAATTGTATT
  TACAGGTAAG TTTGCCTTTT ATAAAGCCTA TCCTGGTTCT ACTGGATGAC TATTTGCATT
  GTACCGTGGA CTAACTTATT TTAGAATAAA GAGTATCATT GAATCAACAC TAGTTAAACC
  TACAGAACTT GCCTAGCATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60961290	NES16169790	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs47537444					SNP	A	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60961290	NES16169790	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149211810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18192	CpG island 18192	439 bp distal
Gm56997	predicted gene, 56997	637 bp upstream
Resf1	retroelement silencing factor 1	within coordinates
Rr380294	regulatory region 380294	260 bp downstream
Rr380295	regulatory region 380295	1178 bp upstream
Rr641719	regulatory region 641719	828 bp distal
Rr641720	regulatory region 641720	970 bp distal
Rr641721	regulatory region 641721	921 bp distal
Rr641722	regulatory region 641722	648 bp distal
Rr641723	regulatory region 641723	147 bp distal
Rr641724	regulatory region 641724	311 bp proximal
Tssr59650	transcription start site region 59650	994 bp downstream
Tssr59651	transcription start site region 59651	874 bp downstream
Tssr59652	transcription start site region 59652	830 bp downstream
Tssr59653	transcription start site region 59653	754 bp downstream
Tssr59654	transcription start site region 59654	557 bp downstream
Tssr59655	transcription start site region 59655	488 bp downstream
Tssr59656	transcription start site region 59656	16 bp upstream
Tssr64179	transcription start site region 64179	662 bp upstream
Tssr64180	transcription start site region 64180	627 bp upstream