rs47538367 SNP Detail

Summary

• ID
  rs47538367
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128047853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CGTGAGAAAT CGGTATCTCG GTGATTTCTA GTCTGGCGAG
  CTAGATCAAT ACGTGAAGAG ACGTACTGAT TATATCTCAA CTAAGTAGGA TACCCCTCTC
  W
  CACACACACA CACCCAGAGA GCCTGTGTAA ACAGAGTCTC TGATTTGTTT GGTTTTGAAA
  CAGGGTCTCC TGTAGCCTGG ATTGGCCTGG AATTCATTAT G                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147738233	ENSMUSSNP6857210	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47538367					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128047853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	within coordinates
Cpgi2388	CpG island 2388	1095 bp proximal
Gls2	glutaminase 2 (liver, mitochondrial)	1980 bp downstream
Rr224447	regulatory region 224447	within coordinates
Rr224448	regulatory region 224448	747 bp proximal
Rr402345	regulatory region 402345	within coordinates
Rr402346	regulatory region 402346	820 bp upstream
Spryd4	SPRY domain containing 4	190 bp upstream
Tssr99849	transcription start site region 99849	209 bp upstream
Tssr99850	transcription start site region 99850	161 bp upstream