rs47538799 SNP Detail

Summary

• ID
  rs47538799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:106094157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCCCAAC AAGATAGGTT
  CGCAGTGGCT GCACATAGAA ACTTCTTTCT ACTTTTACAG TGATGCAAAA CAGATAATGG
  AGGCTTCGCA GTCCAGTTTT CAGTTAGTGT GTAAGTAGGC ACAATGAAAT CTCATCATTT
  AATACCTACT GCTACGGAGG ACAGGCATTC CCAGATTCAT CACAAAGTCA CCAAGGCTGA
  Y
  TGGCACACGA GTCGTTGTAC TCTCAAAACC TTTCCACTCT CTGAGATGTT AAAGGCTAGT
  CATAACTAAT GGACTCTTGT CATGTTTCCC TCTGTTCCTT CTATAGCACA CATTGGAGTA
  TAGATAAGAG CATGCAAGGG AAGAAAACAT ACATACATAC ATACATACAT ACATACACAT
  ACACACACAA AATATTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146767800	ENSMUSSNP5873243	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47538799					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:106094157 () rs orientation: forward

Symbol	Name	Function Class
Gm48970	predicted gene, 48970	within coordinates
Gm63380	predicted gene, 63380	914 bp downstream
Rr390111	regulatory region 390111	1493 bp upstream