rs47538831 SNP Detail

Summary

• ID
  rs47538831
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29893954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA CCCTAAGGTG TGTAAAACCG
  R
  ACGTGTCTCA GATCCAGGCC TTCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60991874	NES16142333	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	A	A		G	A	A	A		A
ss148668632	ENSMUSSNP5715722	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss322132191	CHEV_7_30979548	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47538831					SNP	A	G	G	G	G	A	G	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991874	NES16142333	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29893954 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18781	CpG island 18781	1500 bp distal
Cpgi18782	CpG island 18782	488 bp distal
Cpgi18783	CpG island 18783	within coordinates
Gm26810	predicted gene, 26810	within coordinates
Rr400232	regulatory region 400232	624 bp downstream
Rr400233	regulatory region 400233	506 bp upstream
Tssr65662	transcription start site region 65662	572 bp downstream
Tssr71696	transcription start site region 71696	1599 bp upstream
Tssr71697	transcription start site region 71697	1578 bp upstream
Tssr71698	transcription start site region 71698	1547 bp upstream
Tssr71699	transcription start site region 71699	1421 bp upstream
Tssr71700	transcription start site region 71700	1386 bp upstream
Tssr71701	transcription start site region 71701	1162 bp upstream
Tssr71702	transcription start site region 71702	710 bp upstream
Tssr71703	transcription start site region 71703	496 bp upstream
Tssr71704	transcription start site region 71704	389 bp upstream
Tssr71705	transcription start site region 71705	367 bp upstream
Tssr71706	transcription start site region 71706	491 bp downstream
Tssr71707	transcription start site region 71707	503 bp downstream
Tssr71708	transcription start site region 71708	517 bp downstream
Tssr71709	transcription start site region 71709	692 bp downstream
Tssr71710	transcription start site region 71710	1034 bp downstream