rs47539188 SNP Detail

Summary

• ID
  rs47539188
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:89314091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAAGCAC TAGGCACTAT
  TATAAATTAC ATTTATGAAG AATAGATGAC GCCACTGACA AACGTTCCTA CTATAAGTTA
  CAATGCAGCA TAAACCTGGT TATCGAGGCT TTGTCCTCCT TGAAGAAAAG CATTAAGCTG
  TGTCAGTAAA TGATATCATT TTAAGCTAGA AAAGAGGCTG AGATACAGCA TAGGAAAGCC
  W
  CCAAGAGATT TAGATAGACG ATGTGGAAAG TAAGAGGCCC CAGGCACTGA GAAGGACCCT
  GGGCAACCTA GACGTTTCCT GAACTAAGGC ACAAGTGAGC TGATTTTTTT TTAATATAAT
  GTTTTTATTG ATTATTTGGA AACTTCATGT CATCTACCCA GATCACATTT TAAGAAAAGA
  AAGAAAGAAA AGAAAAATAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148517907	ENSMUSSNP3765017	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47539188					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:89314091 () rs orientation: forward

Symbol	Name	Function Class
Rr319439	regulatory region 319439	310 bp proximal
Rr324507	regulatory region 324507	533 bp proximal