rs47539255 SNP Detail

Summary

• ID
  rs47539255
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164175142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC GCTGCATGGC AGGCCCTTGA
  Y
  GGAGTCCTGA TGCACCACTG ACCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148223089	ENSMUSSNP5357328	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320605471	CHEV_2_164158958	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47539255					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164175142 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	107 bp upstream
Tssr745	transcription start site region 745	150 bp upstream
Tssr746	transcription start site region 746	161 bp upstream
Tssr747	transcription start site region 747	174 bp downstream
Tssr748	transcription start site region 748	195 bp upstream
Tssr749	transcription start site region 749	227 bp upstream
Tssr750	transcription start site region 750	240 bp upstream
Tssr751	transcription start site region 751	294 bp upstream
Tssr752	transcription start site region 752	363 bp upstream
Tssr753	transcription start site region 753	370 bp upstream
Tssr754	transcription start site region 754	1042 bp upstream
Tssr21562	transcription start site region 21562	486 bp downstream
Tssr21563	transcription start site region 21563	477 bp downstream
Tssr21564	transcription start site region 21564	446 bp downstream
Tssr21565	transcription start site region 21565	433 bp downstream
Tssr21566	transcription start site region 21566	422 bp downstream
Tssr21567	transcription start site region 21567	410 bp downstream
Tssr21568	transcription start site region 21568	401 bp downstream
Tssr21569	transcription start site region 21569	73 bp upstream
Tssr21570	transcription start site region 21570	135 bp upstream
Tssr21571	transcription start site region 21571	166 bp upstream
Tssr21572	transcription start site region 21572	183 bp upstream
Tssr21573	transcription start site region 21573	212 bp upstream
Tssr21574	transcription start site region 21574	276 bp upstream
Tssr21575	transcription start site region 21575	1054 bp upstream
Tssr21576	transcription start site region 21576	1070 bp upstream
Tssr21577	transcription start site region 21577	1089 bp upstream
Tssr27433	transcription start site region 27433	131 bp downstream
Tssr27434	transcription start site region 27434	154 bp downstream
Tssr27435	transcription start site region 27435	182 bp downstream
Tssr27436	transcription start site region 27436	201 bp downstream
Tssr27437	transcription start site region 27437	222 bp downstream
Tssr27438	transcription start site region 27438	252 bp downstream
Tssr27439	transcription start site region 27439	266 bp downstream
Tssr27440	transcription start site region 27440	276 bp downstream
Tssr27441	transcription start site region 27441	331 bp downstream
Tssr27442	transcription start site region 27442	339 bp downstream
Tssr27443	transcription start site region 27443	402 bp downstream
Tssr27444	transcription start site region 27444	411 bp downstream
Tssr27445	transcription start site region 27445	1027 bp downstream
Tssr27446	transcription start site region 27446	1071 bp downstream
Tssr27447	transcription start site region 27447	1166 bp downstream
Tssr27448	transcription start site region 27448	1780 bp downstream