rs47540754 SNP Detail

Summary

• ID
  rs47540754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72899730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGACAGT CCTGAGCCTT
  TTGTTAAGCA CCTCTTTGTT GAAGAAGCCA GTGGGCAATG AGATGCTTCT CTTGGATCAA
  AATCAGGCTG GCAAATGACA ACAGTCGTGA AGATCCGGGC CTGAGTTGTC CTGGGCTTTC
  TACCATCCTC CATCACAGGG AAGGATGTTT GAGTCGGGCA GAGGAGACTC ATGAAGCACT
  Y
  GAAGGATTCT TTGGCCTCAG TTCCTCCTTG GGGGCCTGAA GTTGAACTGA AGTTGTGCTG
  TCTTTCCAAG GCATCCTCTT CACCCTTCAA TACCCAGTCA GGCTAACCAG CCTTGTTTCC
  AACCGTGTGT CTCAAGTCTG GATCCTGCCT CAGTTACCCA CCATCTGGGC CCTGTGACTT
  GAACTGACCT CATTTCTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60750502	NES16391809	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47540754					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60750502	NES16391809	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72899730 () rs orientation: forward

Symbol	Name	Function Class
Cpgi362	CpG island 362	1794 bp proximal
Igfbp5	insulin-like growth factor binding protein 5	within coordinates
Tssr7342	transcription start site region 7342	1793 bp upstream
Tssr12187	transcription start site region 12187	1813 bp upstream
Tssr12188	transcription start site region 12188	1497 bp upstream
Tssr12189	transcription start site region 12189	758 bp upstream
Tssr12190	transcription start site region 12190	262 bp upstream
Tssr12191	transcription start site region 12191	457 bp downstream
Tssr12192	transcription start site region 12192	925 bp downstream
Tssr12193	transcription start site region 12193	1090 bp downstream
Tssr12194	transcription start site region 12194	1270 bp downstream
Tssr12195	transcription start site region 12195	1630 bp downstream
Tssr12196	transcription start site region 12196	1724 bp downstream
Tssr12197	transcription start site region 12197	1742 bp downstream
Tssr12198	transcription start site region 12198	1758 bp downstream