rs47541472 SNP Detail

Summary

• ID
  rs47541472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:65433267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGTTCTA TTAGCAAAAT
  CTTCCTAAGG AGAGCCCCAG ATCTTTGCAA GTAAAATGGA GAGACTCAGT CTGCTTCTGA
  TTGGTCTTCT CTGGCTCTCC CCCAAGCCAG CTCAGGACTC CAGCCAGCTG TTTTTATCAC
  TCTTCTAACA CTCATGCTCT GCCATCCCAC TTCAGCCTGA GGTGAACTCT CCTGAAGCCC
  Y
  GAAAAGTCTT CTGATGGAGT CTACCATCAC CTTCTCCTGA AGCTCTGTAA ATACTCACAC
  ACACACCTGA CAAATTACAG ACAAGGGAGA AAGGCCAACG TGGGATGTTG GACCTTTTGT
  TTAAAGTACA GAATCTATTT TGTAGATTAC TCCTGCTGAG GACAGACTAG TGCAGGAACA
  TGCTGATTCT TTTTTCATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137833790	ENSMUSSNP5988135	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss324073121	CHEV_12_66487480	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47541472					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:65433267 () rs orientation: forward

Symbol	Name	Function Class
Rr260997	regulatory region 260997	867 bp distal
Rr267826	regulatory region 267826	within coordinates
Rr387347	regulatory region 387347	within coordinates