rs47541476 SNP Detail

Summary

• ID
  rs47541476
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121615087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAAGGCTGG GAAGATAGCT CAATGAGTAA AGTGACTGCT
  GTAAAGTGTG AGGACGTGAG TTTGAATCCC CAGACCCAGG TAACACAGCA CACGGTAGCA
  Y
  GCCTATAATC TGAGCACTCT TACTTCAGGA TGGGAGACAG AGACAGGAAA AATCCAGAAA
  CCCACCAGCC AGCTAGCCTG ACAGACAGTA GAGGACAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135729795	ENSMUSSNP5895923	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47541476					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121615087 () rs orientation: forward

Symbol	Name	Function Class
D3Mit347	DNA Segment, Chr 3 Massachusetts Institute of Technology 347	1627 bp proximal
Rr584177	regulatory region 584177	621 bp distal
Rr584178	regulatory region 584178	297 bp proximal