rs47541625 SNP Detail

Summary

• ID
  rs47541625
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40244337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTAGGTTT TTAAGTTTTT
  TTATGATTGT ATTTTTTAAA TAGTAGACAA AACTGAAGTA AAGCCAACCA TATGCTTTAA
  AAAGCAGCTG GCTTGATAAA GAAGATAGAG GGCCATGGGA GAGGGGATGG TCTTGCTATT
  TTCAGATTTA GTGTTACACT GTTTTACTTG GGAAGACAGA TCTGTAACAG TTGAAAGAAG
  Y
  CTGGGCTGCA CTGTGTCCGC CATTCCCATA GCACCTCCTG AGTGGTGCCT CGAATGCAGG
  CTCCTGTTTT ATCCTGCAGA AACCCAGCTG CTCTGATGAG AAGAATGGGC TCATATTGAG
  GAGGGGTAGG TAGTGATGGG GCTGTGGGCT CCACTGGGAA CAGTGTGCTG CAAGGTGAGA
  CAGGAAAGAC TTCATTCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52244115	NES15264598	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47541625					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52244115	NES15264598	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40244337 () rs orientation: forward

Symbol	Name	Function Class
Cdk19	cyclin dependent kinase 19	within coordinates
Rr214650	regulatory region 214650	864 bp proximal
Rr214651	regulatory region 214651	1864 bp proximal
Rr219330	regulatory region 219330	464 bp proximal
Rr222642	regulatory region 222642	1341 bp proximal