rs47542100 SNP Detail

Summary

• ID
  rs47542100
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79585686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAATGTGT GACGGAGTAG
  GGATAGGTCA GATCTGCAGC AAGGGAAACC TCAATCTCTG CAATCCCAGC AAGTTCCTCA
  ACCTTTAATG AGCCTACGCT TCTTGCTCAG CAAAAATAGA AAGAAACGTG TCTAATGGTT
  TGTAAAGATA GAACTCTCCC TCTCCTAGTC TCGTGGACAT AGCATTCATT ACTTTGTCTC
  M
  CACTTCTCAA GGATTCGGAT GGATCGATCG CTTCTCTAGC CCCACAGTGC CCTTTGCTCC
  AGAGTGTCTG CAAGCCTTTT ATTCTCAGCC TGCACCCGGG AATCTCCTCC GACCCGGAAA
  TCATTGGGAA ATCGTCTTGT TTTATTGGCT CCTTTGTGCC AAATTCTGGC GCAGGTGGCC
  ACATTCTGTT GTGCCAGGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61024858	NES16103380	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47542100					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61024858	NES16103380	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79585686 () rs orientation: forward

Symbol	Name	Function Class
Arpin	actin-related protein 2/3 complex inhibitor	674 bp upstream
Cpgi19319	CpG island 19319	543 bp distal
Gm31966	predicted gene, 31966	within coordinates
Rr649743	regulatory region 649743	858 bp distal
Rr649744	regulatory region 649744	within coordinates
Rr649745	regulatory region 649745	179 bp proximal
Tssr73196	transcription start site region 73196	683 bp upstream
Tssr73197	transcription start site region 73197	567 bp upstream