rs47542639 SNP Detail

Summary

• ID
  rs47542639
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89363353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTATGCA CCCCAGTTTC
  ACAGTTACAG CATAAATCCC TTTATGAAGA CTGTCCTTAT GACAGTCAAC TCTCAGAAGA
  CCCTACCTCC CAAACCCATT ATGTTAGGGA TCTCAGTCTA ACATGAGGAT TTGGGGATAC
  ATTCTTTTAA TAGTTATTAT CCTAGCTATG AGCTAGGCAT AATGGGGCCC TTCGTGTTCT
  R
  TTGACAAGCT GGAGAACTGA GGTTTGGTGC ATGGAGCTGG TGGGATGCGG AGCCAGTGCC
  TGACACAGAA AGGTCATGGG ATAGGCTAGG GTACGGCCCA GGTGGACATC TTGCACTCCC
  CTGGCTGTGA ATGAGCCAGG CTGTACCTTC TCTACCCTTG GCATGGCTAA TACTTCTTGA
  AGCCATTCTA CAGTGTGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60646312	NES16265264	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47542639					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60646312	NES16265264	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89363353 () rs orientation: forward

Symbol	Name	Function Class
Rr187078	regulatory region 187078	352 bp distal
Rr382438	regulatory region 382438	within coordinates
Snx20	sorting nexin 20	597 bp upstream
Tssr82357	transcription start site region 82357	738 bp upstream
Tssr82358	transcription start site region 82358	609 bp upstream
Tssr82359	transcription start site region 82359	593 bp upstream
Tssr82360	transcription start site region 82360	562 bp upstream