rs47542671 SNP Detail

Summary

• ID
  rs47542671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40517086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCTAAGA TTTGCTCAGC
  CATACCTTTC ATGAGGTAAC TCTTTACACC TTTAAAAAGA TGTTCTGATG GAGTAATCAT
  CAACACTGAG TAGAGTGCCT TTTGTACATG GAGCCTCCTG CCATCCTTCA CTGTGCTCAA
  TCAGCCCAGG CTCTGTGCTG ATCCCAGACC CTCTTAGAGC ATCATCTGGT GATGCTCACA
  Y
  GGATGCTAGT CAACCAAAGA AAGAGGACAC AATTTCAGGT CAGAGTGGAC AAGTTCATAG
  CCTCCTTGGG GAAACTGGCA GTATCTAGGG AATCCATGGC AACTTCACAG GAGTTTATTA
  GTAAATAATG ATACATAAAG TAGCTGATTC CACACAACCC CATCCCTTCA GCACACCGGA
  AAGAATTGCA TTTTGTACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147693530	ENSMUSSNP669722	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47542671					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40517086 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	680 bp proximal
Gm63080	predicted gene, 63080	within coordinates
Rr501588	regulatory region 501588	459 bp proximal
Rr501589	regulatory region 501589	1356 bp proximal
Rr501590	regulatory region 501590	1919 bp proximal
Tssr4586	transcription start site region 4586	1605 bp upstream
Tssr131170	transcription start site region 131170	1191 bp upstream
Tssr131171	transcription start site region 131171	1222 bp upstream
Tssr131172	transcription start site region 131172	1304 bp upstream
Tssr131173	transcription start site region 131173	1330 bp upstream
Tssr131174	transcription start site region 131174	1379 bp upstream
Tssr131175	transcription start site region 131175	1518 bp upstream
Tssr131176	transcription start site region 131176	1569 bp upstream
Tssr131177	transcription start site region 131177	1618 bp upstream
Tssr131178	transcription start site region 131178	1647 bp upstream
Zfpm2	zinc finger protein, multitype 2	1352 bp upstream