rs47544907 SNP Detail

Summary

• ID
  rs47544907
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97228240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCACTTT GATAAACTAA
  AATGATAATA ATAAAGTCAG ATATTGATGG CTTTTGCTAC TTAATGCAGT ATGTCGATCT
  CTGTTTCCCA TCAGACAGAC CTAGCCTATG CATAGCAGAG ATGTTATTCT ATCCCATCAG
  ACACAGTTGC TCTTACTTTG TGTCTCTGTT TAGCTTTCCC GCTGGGTTGA GCTACATCCT
  Y
  ATTGCCTTGT CAGCTAGAAA CCCTGTTCCT CGCTGACCAC ACCCTCCACT CCACTGGCAA
  CCACAGATGG TTCTCTTCCC ACAGTAGCTT CTGGACCACG ATGTCAGTCC ATTTTTTTTT
  CTTGCTATAA CAAAAGATGT AAAGCTATGT GTTTTATAAA GAAAATAATT TTCTGGGGCT
  GGAAACATAG CCCACTGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss63608909	NES17040858	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C		T
ss325076634	CHEV_15_97160790	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs47544907					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63608909	NES17040858	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97228240 () rs orientation: forward

Symbol	Name	Function Class
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr391161	regulatory region 391161	1691 bp upstream
Rr508789	regulatory region 508789	1988 bp distal
Rr508790	regulatory region 508790	1871 bp distal
Rr508791	regulatory region 508791	526 bp distal