rs47545212 SNP Detail

Summary

• ID
  rs47545212
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:87752978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCA AAACAACAAG TCATGCATTC
  W
  CCGCCATTGC CTTTGTGTTG GAAGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss60762275	NES16403499	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	A			A	A		A
ss144885035	ENSMUSSNP2431876	ENSEMBL	ENSEMBL_Sanger	f	SNP	A					A
ss319829833	CHEV_1_89721831	CHEVERUD	SCREENING_POP	f	SNP							T			A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs47545212					SNP	A	T	T	T	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60762275	NES16403499	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87752978 () rs orientation: forward

Symbol	Name	Function Class
Rr371669	regulatory region 371669	1096 bp upstream
Rr414853	regulatory region 414853	278 bp distal
Rr414854	regulatory region 414854	183 bp distal
Rr414855	regulatory region 414855	1802 bp proximal
Sag	S-antigen, retina and pineal gland (arrestin)	Intron