rs47545672 SNP Detail

Summary

• ID
  rs47545672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:131229180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTACAGGCA TGCACTATCA
  TACCAGGCAC TGCAATTCGG AAACTCTGAA GCATTTGCAA GGGGTAGAGA ACCCCTGTAA
  TTAAAAAGAA GGATGAAAGC TGCTGGGGGA ATGGAGCTTC TGACATTGGA TTCCATCTAC
  TCTGCAGGGA AACAGCCCCC GGGGAACAGC CCCTTCCTTT GCTGCCCCAA TGAGGAAACA
  Y
  CCCATCCTTT GATAGGCAGT CATTAATCTA TGGATTAAAA AACCCATACT TAGCTACCTC
  CCTTGATCCC TTTTGGCACA TGTTGTAAAC AGAAGAATAT GGCTCCACGG GGCCAACCAG
  GAACCCAGGG CTGGGGAAAT GATCTCTCTG CTAGACTGGA AAAGACAGAC ACCCTGACTG
  TTTGACCAAC AAATGTACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145934708	ENSMUSSNP647817	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47545672					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:131229180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19823	CpG island 19823	878 bp proximal
Rr656477	regulatory region 656477	792 bp proximal