rs47545905 SNP Detail

Summary

• ID
  rs47545905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122966861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATTAAA AGAGAGCTCA
  TAGATCCATA CACCAGACTA ACGCAGGAAT AGAGTATATG GATAAACTCC AGGAGGTGAG
  CTTCCTTGAA ACTCTCTGCC TTGTGAGTGG CTTTTAGGCT TCACAGTCTG TCAAGCTGAC
  TCGACTGAAG TGCGTGGCAG TGAGGGACAA CGATCCTCTA GAATGTGATA TCACAATTTG
  Y
  TTCTTCAGTC AAAATCAATG TCATGTCTTA AGTGTTTGCC CATTTTGTCT GGTTTTCCTT
  AAAAAAAAGG AAAACTGGTT TGCATATAGA ACTGCGCGAG TTTATGTTTG CTGTGTCTTA
  GGATAGAGTT CTCTAATAGC ATGGTTCCTC TTTTCTTCTC CTTCCTATTT CTTTTCTTCC
  CCCTTTGAGT TCCCACTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60937744	NES16191466	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C		C
ss321934839	CHEV_6_122939920	CHEVERUD	SCREENING_POP	f	SNP		T				C
SNP Consensus Information
SNP					Consensus Type	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs47545905					SNP	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60937744	NES16191466	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122966861 () rs orientation: forward

Symbol	Name	Function Class
Clec4a4	C-type lectin domain family 4, member a4	465 bp upstream
D6Mit300	DNA segment, Chr 6, Massachusetts Institute of Technology 300	1451 bp proximal
Tssr58744	transcription start site region 58744	393 bp upstream
Tssr58745	transcription start site region 58745	448 bp upstream