rs47546821 SNP Detail

Summary

• ID
  rs47546821
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:15513965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGCTTCTT AATTTCTTAG
  TTTTCTCTCA TTTCTCTTCT ATAGATAAAT TAATAAAGTA ACATGGGCTT TGGAATCACC
  CCTCTCCAAG CTAAGTTATA TTTAGCTTAC TTTAACAAAT GTTCATTGAG CTTGTTGCTC
  TGGATGGAGT TTGTGTTGGG CAAGTAATGG AAGGGTGAAT CTGACCTTGG GGATTTTACA
  S
  TCTAGGGAAA AGATAGGTAT ATAAAAAGAT TATTCCAACC TGAACATGTT ATTTAATGAA
  TGTTCTGTGA ATAGTTTTGT AATACAAAGG GGTATCCTAG TACACAATGT ACTCCAGATA
  AACTGAGTTC AATCACTTAG AAATAAGTAT TATTTATATA CATAAATATT AGAACTGGAG
  AGATACTGGC TAGATCCAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61753589	NES17687302	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47546821					SNP	C	C	G	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61753589	NES17687302	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:15513965 () rs orientation: forward

Symbol	Name	Function Class
Rr704	regulatory region 704	658 bp proximal
Rr2079	regulatory region 2079	within coordinates
Rr2273	regulatory region 2273	705 bp distal
Rr475213	regulatory region 475213	1908 bp proximal