rs47547303 SNP Detail

Summary

• ID
  rs47547303
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:55808840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTATAAA GCTACTAGAA
  AGTAGCACGC AACAAATGTC AATCCCTGAT TTAATCTTCC CAACAAAGCT TCTAAGTTAT
  TTGCTCTAAA AGTCCCCACC TATTTTGATG TATAGTAAAT ATTTAGGTGA ACAACAAACA
  GCAATCAATA CCATCTTTTC CATATTGAAA AAGATCATTA TGTAAGTCAT GCTTTTTCTT
  W
  CTCCCAGAAC TGAATACATT ATTAATAAGA CTGTTTATAG AAACAAGGGT AGCTTTACCT
  AAGACTGATT TGTGGCCTTT TCTGATTAAC AGGTGCCGAC AACTCTGCAA TGCAGCTATC
  ATTGGAAAGT CAGCACGAAG TCCAGTTGCA TCTTAGTAAT AGATTTTGTT GTGTTTTATT
  TTTGGAAGTT CTTTGATTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61276546	NES16777710	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T		T	A		A
ss323312448	CHEV_10_55652550	CHEVERUD	SCREENING_POP	f	SNP										T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs47547303					SNP	A	A	A	A	A	A	A	A	T	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61276546	NES16777710	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:55808840 () rs orientation: forward

Symbol	Name	Function Class
Gm67546	predicted gene, 67546	149 bp downstream