rs47550312 SNP Detail

Summary

• ID
  rs47550312
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72322427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cagataaga gatctgtctg ctcttccaga
  ggtcctgagt tcaatttcca gcaaccatat ggtagctcac aaccatctgt aatgggatct
  gatactgtct tctggtgtgt ctgaagacag ctacagtgta ctcatataca taaaataaaa
  W
  tttaaaaatc tttaaaaaaa aTCTACTTGT CAAAGCTCTT TGCACAATAC AAGCGTCGTG
  TTGGAAATAC TTTTCAAATA TGCCTTTATA AACTTTGCAC TCTTCCTTCT TACCCACAtc
  ttcgaggcag ggtttctttg tgaaacctcg                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319788273	CHEV_1_72329842	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47550312					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72322427 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	768 bp proximal
Pecr	peroxisomal trans-2-enoyl-CoA reductase	within coordinates
Tmem169	transmembrane protein 169	1127 bp upstream
Tssr114	transcription start site region 114	1004 bp downstream
Tssr115	transcription start site region 115	1020 bp downstream
Tssr116	transcription start site region 116	1037 bp downstream
Tssr7298	transcription start site region 7298	1099 bp upstream
Tssr12164	transcription start site region 12164	956 bp downstream
Tssr12165	transcription start site region 12165	980 bp downstream