rs47550572 SNP Detail

Summary

• ID
  rs47550572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91052876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGTTTCC AGTGAGAGGC
  TTGAAATTCA GGTGTAGGCT CTCGCTCTTA TCCTGACTGA GTTCAGTGAA AAAGCAATAG
  GTATTGTTCT TGTTTACAAC GTACGCGAAG TCATGCCTTG ACATTTTTAC TCTTAACATC
  ATTTGGAAAG GTTCAAGCTG GTACAATTGT AACGCCAGCT CTACTATTCT AGTTTCAAAG
  Y
  GCCCAGAGTG TTTATTGCTG GAAAGTCCAG CAATAGGTAG CAGGTCCCTT GTGGAGGCTA
  GAGATGGTTT CGTTTGGAGA GTAAACCAAG GTCCAGGATG AAGTCAAAAG AAGGGGGCTC
  TGCAACCCGC CTTTAAGATA CCCACTAACA GCAACCATTT TCTCATCACA GAGGCAAGGC
  TAACTGACCT GGAAAGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198256	NES16702736	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47550572					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198256	NES16702736	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91052876 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	1813 bp upstream
Tssr47224	transcription start site region 47224	1308 bp downstream
Tssr47225	transcription start site region 47225	1206 bp downstream
Tssr47226	transcription start site region 47226	1137 bp downstream
Tssr47227	transcription start site region 47227	943 bp downstream
Tssr47228	transcription start site region 47228	880 bp downstream
Tssr47229	transcription start site region 47229	859 bp downstream
Tssr47230	transcription start site region 47230	834 bp downstream
Tssr47231	transcription start site region 47231	804 bp downstream
Tssr47232	transcription start site region 47232	657 bp downstream
Tssr47233	transcription start site region 47233	607 bp downstream
Tssr47234	transcription start site region 47234	572 bp downstream
Tssr47235	transcription start site region 47235	171 bp upstream
Tssr47236	transcription start site region 47236	191 bp upstream
Tssr47237	transcription start site region 47237	240 bp upstream
Tssr47238	transcription start site region 47238	246 bp upstream
Tssr47239	transcription start site region 47239	306 bp upstream
Tssr47240	transcription start site region 47240	318 bp upstream
Tssr47241	transcription start site region 47241	333 bp upstream
Tssr47242	transcription start site region 47242	370 bp upstream
Tssr47243	transcription start site region 47243	393 bp upstream
Tssr47244	transcription start site region 47244	427 bp upstream
Tssr47245	transcription start site region 47245	447 bp upstream
Tssr47246	transcription start site region 47246	498 bp upstream
Tssr47247	transcription start site region 47247	542 bp upstream
Tssr47248	transcription start site region 47248	605 bp upstream
Tssr47249	transcription start site region 47249	675 bp upstream
Tssr47250	transcription start site region 47250	813 bp upstream
Tssr47251	transcription start site region 47251	877 bp upstream
Tssr47252	transcription start site region 47252	929 bp upstream
Tssr51810	transcription start site region 51810	1874 bp upstream
Tssr51811	transcription start site region 51811	1820 bp upstream
Tssr51812	transcription start site region 51812	790 bp upstream
Tssr51813	transcription start site region 51813	773 bp upstream
Tssr51814	transcription start site region 51814	190 bp downstream
Tssr51815	transcription start site region 51815	224 bp downstream
Tssr51816	transcription start site region 51816	258 bp downstream