rs47550599 SNP Detail

Summary

• ID
  rs47550599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130289408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATG GGTATATGTG CTCATGTTTA
  Y
  GTATTCAGGG ACCTTCATAT TCAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135895111	ENSMUSSNP3931264	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320965214	CHEV_3_130198677	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47550599					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130289408 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Rr585170	regulatory region 585170	573 bp distal
Rr585171	regulatory region 585171	826 bp distal
Rr585172	regulatory region 585172	622 bp distal