rs47551057 SNP Detail

Summary

• ID
  rs47551057
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:114633681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTGAGTAT TCGTTTTCCT CTTCTAAGTG ACACAGAAAC
  ATCCACAATT TGGTCTTCCT TCTTTAACTT CATATGATCT GTGAATTTTA TTTTTAGTAT
  M
  CTGAACTTTC TGGCTAATAT CCCATTATTA GTGAGTGAAC ACAATGTGTG CTCTTTTGTG
  ACTTGGTTAC CTCACTCAGG ATACTTTCAA GTTCCATCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SWR/J	ZALENDE/EiJ
ss387442756	MGP_WTSI_12_115908272	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SWR/J	ZALENDE/EiJ
rs47551057					SNP	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387442756	MGP_WTSI_12_115908272	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:114633681 () rs orientation: forward

Symbol	Name	Function Class
Gm46322	predicted gene, 46322	1162 bp upstream
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv1-17-1	immunoglobulin heavy variable V1-17-1	1907 bp downstream
Rr473858	regulatory region 473858	1476 bp distal