rs47552335 SNP Detail

Summary

• ID
  rs47552335
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40553810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTTTGGG CTTAACTTTA
  AGGTCTATAT TCAGATCTCT GAGGTTTGAT AAGGACACTC CCAACGCCCA GGCACTCTGA
  ATGTACCTCA GCCTGAATTA AACCATTATC ATGAACAATG CCTGGTCTAT CCGTTTCCCC
  TTCATCCTCA GTATTCCTCC TTTAATCCCA TTTAGATTTT GGATTACTGG GCTGTCCCTG
  C
  CACACCCTGG GAGTCTAAGC TCATGTGCCC TCATGTGCTT TCCTCTGAAC CTGCAATAGG
  TGGTAGGAAA ACCTCAAATC CTTTTGGGAT TTGAGCTAGT TCCACAATTA GCATGAATAC
  ATGATTTTAT TTATTTATTT ATCTATTTAT TTATTGGCTT AGACCTGCCC TCAGTTGCTA
  ACTCTTCTCT TAGATTTTCA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss148982887	ENSMUSSNP3994239	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs47552335					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40553810 () rs orientation: forward

Symbol	Name	Function Class
Il18rap	interleukin 18 receptor accessory protein	738 bp upstream
Rr410075	regulatory region 410075	264 bp proximal
Rr410076	regulatory region 410076	723 bp proximal
Tssr65	transcription start site region 65	845 bp upstream
Tssr6477	transcription start site region 6477	727 bp upstream
Tssr6478	transcription start site region 6478	792 bp upstream
Tssr6479	transcription start site region 6479	821 bp upstream
Tssr11438	transcription start site region 11438	565 bp downstream
Tssr11439	transcription start site region 11439	1797 bp downstream
Tssr11440	transcription start site region 11440	1807 bp downstream
Tssr11441	transcription start site region 11441	1825 bp downstream
Tssr11442	transcription start site region 11442	1841 bp downstream
Tssr11443	transcription start site region 11443	1872 bp downstream