rs47553027 SNP Detail

Summary

• ID
  rs47553027
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:35932962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGCTACCA AGTCAATGCT CCCCAACTAG CCACTCTATT
  GCATCTCATC TCTGCTGAGC AAACCAAGCT CTTATTTATT TTTAAGTGCA CACACACACA
  T
  ACATGCATGC ATGTGTATGC GTGCTTGTGT GTGTGTTTGT GTGCCCTTAA TCACAGTGTC
  CTTTCTCCAG TCCCCAAATC ACGGTTTGCC TCAGGCATT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss131955132	ENSMUSSNP1774133	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs47553027					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:35932962 () rs orientation: forward

Symbol	Name	Function Class
D11Mit108	DNA segment, Chr 11, Massachusetts Institute of Technology 108	206 bp distal
Rr240121	regulatory region 240121	1362 bp distal
Rr243857	regulatory region 243857	947 bp distal
Tenm2	teneurin transmembrane protein 2	within coordinates