rs47553744 SNP Detail

Summary

• ID
  rs47553744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126930886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGATCCTG TTAAAGATGG
  TTGTGAGCCA CCATGTGGTT GCTGGGAATT GAACTCAAGA CCACTGAAAG GCAGTGAGTG
  CTCTTAACTG CTGAGCCATC TCTCCAGCCC CCGATTCTTC CTAGTAGAAG ATATTGACAA
  ATTCCCCACC TGAGATCTAA GAGCCTCAGT GGTAGAGCAG TTGGCAAGCA TGCAGAAAGC
  Y
  CTGAGTTCCG TTCTTAGTGC TGAAAAGAAA TATCACCTGC TTAAAAGATT TATATGTGAC
  TTGTATGCAT ACCTTGTATA TGAAGGATCC CAGGGAGGGT GGTTAGAAGA GAGAGTCAGA
  TCTCCTGGAA TTATGGGAGG GGCTGGGAAC TGAACTCAGC TCCTCTGCAA AAGCGTTAGC
  CACTCTTGAC TGTTGTGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145879483	ENSMUSSNP494178	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss322451420	CHEV_7_134475228	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47553744					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126930886 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	within coordinates
Tssr69200	transcription start site region 69200	640 bp upstream
Tssr69201	transcription start site region 69201	1856 bp upstream
Tssr69202	transcription start site region 69202	1888 bp upstream
Tssr69203	transcription start site region 69203	1936 bp upstream