rs47554463 SNP Detail

Summary

• ID
  rs47554463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30093834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT CTGCATTCTA ACCTTCCTCA
  R
  CTCCACCAGC CTCGGCGTTT AAGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60991164	NES16138916	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	A	G	G	A	A		A	A	A	G		A
ss148676576	ENSMUSSNP3015991	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss322133921	CHEV_7_31179428	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47554463					SNP	A	G	A	G	G	A	G	G	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991164	NES16138916	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30093834 () rs orientation: forward

Symbol	Name	Function Class
Gm42376	predicted gene, 42376	within coordinates
Rr155979	regulatory region 155979	567 bp proximal
Tssr2182	transcription start site region 2182	29 bp upstream
Tssr2183	transcription start site region 2183	417 bp upstream
Tssr71732	transcription start site region 71732	99 bp upstream
Tssr71733	transcription start site region 71733	21 bp downstream
Tssr71734	transcription start site region 71734	113 bp downstream
Tssr71735	transcription start site region 71735	155 bp downstream