rs47554620 SNP Detail

Summary

• ID
  rs47554620
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:73414518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGACAAACA CACACTGAGA CATACACAGA GGCATAGACA
  CAGACACACT TTAAAGTAAA AAGAAGTTTT TAATTTCATA AAAAAATTCA TGGTGTAGGC
  W
  GTGTGCGGTC CTTCCTTCTA AAGTCTCTGT CCTTTCTGGC TGTGTGACTT CAGGATGACC
  ACTGGGTCTG TTTGTGCCTT GGTTTTCCTG TTTATAAATG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60635580	NES16027864	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47554620					SNP	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60635580	NES16027864	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:73414518 () rs orientation: forward

Symbol	Name	Function Class
Nwd1	NACHT and WD repeat domain containing 1	within coordinates
Tssr78010	transcription start site region 78010	682 bp downstream
Tssr78011	transcription start site region 78011	496 bp upstream
Tssr78012	transcription start site region 78012	536 bp upstream
Tssr78013	transcription start site region 78013	565 bp upstream
Tssr78014	transcription start site region 78014	589 bp upstream