rs47555289 SNP Detail

Summary

• ID
  rs47555289
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52234598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTAACAC TTTCATCTCC
  TCGAAACCTT TTCAGTTGTG AGCTTTTAGT TATGTGAGAT TTTTTTCCTC TTCTCATAAA
  AAATTTAGAA AAACCTGAAC AATAATAATA ATAAAAGACT GGTCCTTGGC TTGTGTAAAA
  CAAACCTGCT TGTTTAGTTT TTGTGCAGTT CAAGTTCCGC GTAGAAAAGT AACTCGGAGT
  G
  TTTCCTTCAG ATTTTAATGG CAGTGATTAT TTCATTAACA GAGCTAATAC CACTATCTAC
  AGATCTAATT TTTCATTTTT AGTGGAAGTA TTTAAAAAGC AGGTGCACAA ATACATTTTC
  ACAGTGTGCT GAATGTCTTT ATTTACAAGA TAGCATTTAC AGTGAATATG AACAGAACGA
  ATGTGTGAAC TGAAATTACT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133191179	ENSMUSSNP4664588	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47555289					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52234598 () rs orientation: forward

Symbol	Name	Function Class
9530018H14Rik	RIKEN cDNA 9530018H14 gene	158 bp upstream
Cpgi17439	CpG island 17439	1947 bp proximal
Hoxa13	homeobox A13	1235 bp downstream
Rr630395	regulatory region 630395	25 bp distal
Rr630396	regulatory region 630396	480 bp distal