rs47556510 SNP Detail

Summary

• ID
  rs47556510
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44888929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGATGTGCT TGGGGGCCAG
  GGTTGGACCC CTGGGGAAGT GAAAGGGCTG CAGAGGAGGT GTGACAGTCC CAGGAGTGAG
  GAGGGCAGCG AGGCAGTGCC TGAATATCCG GTGGAGGAAG TGAACCTCAG ATGGCACTTC
  CTACCTCTGC GGAGAAACCT GAGGGGAGGA GGCCCCAGAA AAGCCAGGCA CTGGAGTGGG
  R
  GTCACTTGAG CATACCTAGC ATCTTCAAAG TTTCCTATGA TGTGCCCAGA AAGAAGTCCC
  TGACACTTGT CAAGTCCCCA GTTCCTCACA GATTTCTAAT GTGGGAAGTT CCTATCACCT
  ATCTACCCAA AGCCTAGTTC TCTGGGACAG CAGCTGCCTT CTGAGACATG TCTCATCTAT
  TTTCTTTCTG TATGTGTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149131882	ENSMUSSNP3912315	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47556510					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44888929 () rs orientation: forward

Symbol	Name	Function Class
Cd37	CD37 antigen	390 bp upstream
Cpgi19038	CpG island 19038	1065 bp proximal
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	1580 bp upstream
Tssr66503	transcription start site region 66503	1569 bp upstream
Tssr66504	transcription start site region 66504	1604 bp upstream
Tssr72351	transcription start site region 72351	749 bp upstream
Tssr72352	transcription start site region 72352	641 bp upstream
Tssr72353	transcription start site region 72353	439 bp upstream
Tssr72354	transcription start site region 72354	402 bp upstream
Tssr72355	transcription start site region 72355	372 bp upstream
Tssr72356	transcription start site region 72356	218 bp upstream
Tssr72357	transcription start site region 72357	210 bp upstream
Tssr72358	transcription start site region 72358	185 bp upstream
Tssr72359	transcription start site region 72359	155 bp upstream
Tssr72360	transcription start site region 72360	118 bp upstream
Tssr72361	transcription start site region 72361	95 bp upstream