rs47558497 SNP Detail

Summary

• ID
  rs47558497
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:99141711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTCTGCC ATACCCTGCC
  CTGCCCAGCC CAGCCTCAGG AGTGGACAGA TTCTCAGCTG ATGGCTCAGC TACTTTTATC
  TCTCTGCCAT CTTGTGGCTT AGAGCTCTTT GGGCATCCCC AAGGATAATT GATGTTGCTG
  GGTGTGATAT CTATGTTGGG TGACTGTTGA CATTGGGTCT CATCTCTTTG ATTTTCCTTG
  Y
  CTTTGTTGCC TTCTTCTCCA TGCTGTCTTT GGTGAAGAGA GCCCTGTAGA ATCATGGTCT
  ATAACACCAT AAATAGTCTG TCTTACTGCT CTGGCTTGCT CTCCTGCACC CTGAGTATTA
  ACAACCTCCC CCACTTCTCT CCACAGGAGG ATTTGAAATA CTATGGTTGA TACTCATAGG
  ATCTTCTTGT GTGGGAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61445194	NES16826073	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47558497					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61445194	NES16826073	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99141711 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cep70	centrosomal protein 70			Intron
				Noncoding-Transcript-Variant
Gm18914	predicted gene, 18914			1287 bp downstream
Gm47199	predicted gene, 47199			within coordinates
Rr383815	regulatory region 383815			1908 bp downstream