rs47558828 SNP Detail

Summary

• ID
  rs47558828
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24916444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATC TACCTGCCTC TGCCACCCAA
  G
  TGCTGGGATT AAAGGCATGT GCTAC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145361487	ENSMUSSNP1360088	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325333074	CHEV_17_24834415	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47558828					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24916444 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8739	CpG island 8739	723 bp distal
Gfer	growth factor, augmenter of liver regeneration	1379 bp upstream
Noxo1	NADPH oxidase organizer 1	within coordinates
Rr523392	regulatory region 523392	1226 bp distal
Rr523393	regulatory region 523393	1391 bp distal
Rr523394	regulatory region 523394	451 bp distal
Tssr5034	transcription start site region 5034	905 bp upstream
Tssr143060	transcription start site region 143060	1150 bp downstream
Tssr143061	transcription start site region 143061	806 bp downstream
Tssr143062	transcription start site region 143062	750 bp upstream
Tssr143063	transcription start site region 143063	824 bp upstream
Tssr143064	transcription start site region 143064	879 bp upstream
Tssr146764	transcription start site region 146764	1474 bp upstream
Tssr146765	transcription start site region 146765	1362 bp upstream
Tssr146766	transcription start site region 146766	1334 bp upstream
Tssr146767	transcription start site region 146767	1304 bp upstream
Tssr146768	transcription start site region 146768	1264 bp upstream
Tssr146769	transcription start site region 146769	934 bp upstream
Tssr146770	transcription start site region 146770	917 bp upstream
Tssr146771	transcription start site region 146771	885 bp upstream