rs47558843 SNP Detail

Summary

• ID
  rs47558843
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46039124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGACCTGG TAAAAACTAA
  AGAAAGAATT CTCTGTGCTG ACAGCAATTA ACACGGCCAA ATAGAGGTGA AAGGCAGATT
  GGCAAACTTA AACTCCTGTA TTCTAAAAGA ACCAGTATTA ATTTACAACA CTTTAGAAGT
  ATAATATCAC TTTTCTCATT AATGTATGTA TTCATTTTAT ATCCTGATCA CAGCCCCCCA
  G
  CCCCCTTCTA ACCCTCATAA GTTCCTCTTC CTATTATCCC TTCCTCTTCT CCTAAGGGGA
  AGCCCCCCTT GTATACGGCC CTGCCCTGGG ACACCAAGTA GAAGCAGGAA TGTGTGTGTC
  CTCTCCCATT GAGGTGCAAC CTGGCAGTTC AGCTAGAGGA AGGGGAGGGT TCCAATGGCA
  GGCAGCTCAG TCAGAGATAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136423319	ENSMUSSNP3645159	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47558843					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46039124 () rs orientation: forward

Symbol	Name	Function Class
Rr678056	regulatory region 678056	1100 bp distal
Rr678057	regulatory region 678057	142 bp distal
Sik3	SIK family kinase 3	within coordinates
Tssr84829	transcription start site region 84829	589 bp downstream