rs47559040 SNP Detail

Summary

• ID
  rs47559040
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:126767397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCACCCC CTTTCTCACC
  AGCACTAGCA CATTCTAACA AGAAGGCCAG GTACAAGAAG GGACACGGCC CCACCCTCCT
  ACTACAAGTG CTCTAAGGTG GCTTGGAAAT AGCATGTCTC CCCAAAGGCT CGTAGGTTGG
  ATGGTTGGTA GCCATTGGTG AATTCAGTCA CTGAGTTGGT TGGGTCCTGA GTGTGCAAAC
  M
  CAGTAGATTC ATCTCCATGG TGGATTCATA ATTTGATAAT ATTTTTGGTG GGGGCTGGGT
  GGAGAAGGCC ACCAGGGACA TCTTATTAGG GGTTGCATCT TGTCCCTGGT CTCTTCCCCA
  TCCCTCCTGT GGCTTGCACC CCAGCTAGCA ACTTTGCTAT GATGCTCTGC CTCACCGTAA
  TCCCACAACA ATGGAGACAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133625919	ENSMUSSNP1473650	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47559040					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:126767397 () rs orientation: forward

Symbol	Name	Function Class
Gm67331	predicted gene, 67331	463 bp downstream
Rr638910	regulatory region 638910	1584 bp proximal
Rr638911	regulatory region 638911	1654 bp proximal